Scientific Reports · 2019 · 20 citations · 39 references
Life SciencesBiochemistryUrologyMass Spectrometric AnalysisMetabolomicsRenal PathophysiologyLipidomicsMass Spectrometry-based MetabolomicsMetabolite AnnotationMetabolite ProfilingRenal DiseaseUntargeted MetabolomicsBiomarker-based Early DetectionMetabolic BiomarkersMetabolomic BiomarkersMetabolomic ChangesMetabolomic SignaturesRenal Biomarker DiscoveryRenal Dysfunction BiomarkersUnilateral Ureteral Obstruction Model
Desorption electrospray ionization mass spectrometry (DESI-MS) is an emerging analytical tool for rapid in situ assessment of metabolomic profiles on tissue sections without tissue pretreatment or labeling. We applied DESI-MS to identify candidate metabolic biomarkers associated with kidney injury at the early stage. DESI-MS was performed on sections of kidneys from 80 mice over a time course following unilateral ureteral obstruction (UUO) and compared to sham controls. A predictive model of renal damage was constructed using the LASSO (least absolute shrinkage and selection operator) method. Levels of lipid and small metabolites were significantly altered and glycerophospholipids comprised a significant fraction of altered species. These changes correlate with altered expression of lipid metabolic genes, with most genes showing decreased expression. However, rapid upregulation of PG(22:6/22:6) level appeared to be a hitherto unknown feature of the metabolic shift observed in UUO. Using LASSO and SAM (significance analysis of microarrays), we identified a set of well-measured metabolites that accurately predicted UUO-induced renal damage that was detectable by 12 h after UUO, prior to apparent histological changes. Thus, DESI-MS could serve as a useful adjunct to histology in identifying renal damage and demonstrates early and broad changes in membrane associated lipids.
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In silico prediction of protein-protein interactions in human macrophages
Oussema Souiai, Fatma Z. Guerfali, Slimane Ben Miled et al. · BMC Research Notes · 2014 · 11K citations · Full text