Science Advances · 2019 · 71 citations · 69 references
Life SciencesBiologyMolecular GeneticsComparative GenomicsGenomicsHost-pathogen InteractionsAnimal GenomicsLyme DiseaseTick BiologyTick-borne DiseasesTick GenomicsTick Host-parasite InteractionsTick-borne PathogensTick-borne TransmissionTick-host Interactions
has a high level of segregating nucleotide variation, suggesting that natural resistance alleles to Crispr gene targeting constructs are likely segregating in wild populations. The reference genome will allow for experiments aimed at elucidating the mechanisms by which this widely distributed rodent serves as natural reservoir for several infectious diseases of public health importance, potentially enabling intervention strategies.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations