Chemical Science · 2019 · 228 citations · 77 references
ComputingChemistryComputer ScienceFeature EngineeringMachine LearningUncertainty QuantificationChemical Space AnalysisChemical Space ExplorationEnsemble MethodsMolecular Property PredictionNeural NetworksActive Learning In Drug DiscoveryArtificial Neural Network SurrogatesComputational Prediction ModelsLatent Space ExplorationLatent Space InterpretationNeural Network ModelingTraining ErrorsUncertainty Metrics
, feature space distances), and each has limitations in estimating prediction errors for chemical space exploration. We introduce the distance to available data in the latent space of a neural network ML model as a low-cost, quantitative uncertainty metric that works for both inorganic and organic chemistry. The calibrated performance of this approach exceeds widely used uncertainty metrics and is readily applied to models of increasing complexity at no additional cost. Tightening latent distance cutoffs systematically drives down predicted model errors below training errors, thus enabling predictive error control in chemical discovery or identification of useful data points for active learning.
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Density-functional thermochemistry. III. The role of exact exchange
Axel D. Becke · The Journal of Chemical Physics · 1993 · 102.8K citations
Natural Sciences, Chemistry, Physics +13
Gradient-based learning applied to document recognition
Yann LeCun, Léon Bottou, Yoshua Bengio et al. · Proceedings of the IEEE · 1998 · 58.2K citations · Full text
Laurens van der Maaten, Geoffrey E. Hinton · Journal of Machine Learning Research · 2008 · 35.7K citations