European Journal of Clinical Microbiology & Infectious Diseases · 2019 · 57 citations · 17 references
Life SciencesInfectious DiseasesMicrobiologyBacteriologyGenomicsMedical MicrobiologyAntibiotic ResistanceAntimicrobial Resistance GenomicsBacterial Disease EpidemiologyBacterial EpidemiologyBacterial InfectionsMolecular Epidemiology Of ResistanceBacterial Enteric DiseasesEmergenceEnteric Bacterial InfectionsEnterococcal InfectionsEnterococciResistance Mechanisms In EnterococciVancomycin-resistant EnterococciWhole-genome Sequencing Analysis
17
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Versatile and open software for comparing large genomes
Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.8K citations · Full text
Haplotype-based variant detection from short-read sequencing
Erik Garrison, Gábor Marth · arXiv (Cornell University) · 2012 · 4.1K citations · Full text