Nature Methods · 2019 · 2K citations · 32 references
Life SciencesBiochemistryChemistryAnalytical ChemistryMass Spectrometric AnalysisMetabolomicsMass SpectrometryMass Spectrometry Data AnalysisMetabolite IdentificationMetabolite ProfilingMetabolomics Data AnalysisStructural ElucidationFragmentation Pattern AnalysisMass Spectral InterpretationMass Spectrometry MetabolomicsMass Spectrometry-based Metabolite ProfilingMetabolite Structure ElucidationMetabolomics Data ProcessingTandem Mass SpectrometryTandem Mass Spectrometry Analysis
Mass spectrometry is a predominant experimental technique in metabolomics and related fields, but metabolite structural elucidation remains highly challenging. We report SIRIUS 4 ( https://bio.informatik.uni-jena.de/sirius/ ), which provides a fast computational approach for molecular structure identification. SIRIUS 4 integrates CSI:FingerID for searching in molecular structure databases. Using SIRIUS 4, we achieved identification rates of more than 70% on challenging metabolomics datasets. SIRIUS 4 is a fast and highly accurate tool for molecular structure interpretation from mass-spectrometry-based metabolomics data.
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Extended-Connectivity Fingerprints
David Rogers, Mathew Hahn · Journal of Chemical Information and Modeling · 2010 · 7.6K citations
PubChem Substance and Compound databases
Sunghwan Kim, Paul Thiessen, Evan Bolton et al. · Nucleic Acids Research · 2015 · 5.5K citations · Full text
Pharmacy, Biochemistry, Chemistry +16