SynSys: A Synthetic Data Generation System for Healthcare Applications

Jessamyn Dahmen, Diane J. Cook

Sensors · 2019 · 168 citations · 14 references

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TL;DR

Creation of realistic synthetic behavior‑based sensor data is crucial for testing machine learning in healthcare, yet existing methods often lack complexity and realism. SynSys is introduced as a machine‑learning based synthetic data generation method designed to overcome these limitations. SynSys generates synthetic time‑series data by combining hidden Markov and regression models trained on real datasets, and is evaluated on a smart‑home dataset and in low‑data scenarios. SynSys produces more realistic data than random, other‑home, or other‑time‑period data, and improves activity‑recognition accuracy in low‑data settings via semi‑supervised learning.

Abstract

Creation of realistic synthetic behavior-based sensor data is an important aspect of testing machine learning techniques for healthcare applications. Many of the existing approaches for generating synthetic data are often limited in terms of complexity and realism. We introduce SynSys, a machine learning-based synthetic data generation method, to improve upon these limitations. We use this method to generate synthetic time series data that is composed of nested sequences using hidden Markov models and regression models which are initially trained on real datasets. We test our synthetic data generation technique on a real annotated smart home dataset. We use time series distance measures as a baseline to determine how realistic the generated data is compared to real data and demonstrate that SynSys produces more realistic data in terms of distance compared to random data generation, data from another home, and data from another time period. Finally, we apply our synthetic data generation technique to the problem of generating data when only a small amount of ground truth data is available. Using semi-supervised learning we demonstrate that SynSys is able to improve activity recognition accuracy compared to using the small amount of real data alone.

References

14