Scientific Reports · 2019 · 39 citations · 108 references
Life SciencesGeneticsMolecular BiologyEpigeneticsEpigenomicsStem Cell BiologyEmbryonic Stem CellsEpigenetic Control Of DifferentiationGenomic ImprintingStem Cell DifferentiationStem Cell Signaling PathwaysWnt SignalingCell Culture ConditionsDna Methylation DynamicsDna Methylation PatternsEmbryonic Stem Cell Epigenetic RegulationMouse Embryonic Stem CellsPluripotencyPluripotency RegulationTranscriptional Repressors
Mouse embryonic stem cells (mESCs) are pluripotent and can differentiate into cells belonging to the three germ layers of the embryo. However, mESC pluripotency and genome stability can be compromised in prolonged in vitro culture conditions. Several factors control mESC pluripotency, including Wnt/β-catenin signaling pathway, which is essential for mESC differentiation and proliferation. Here we show that the activity of the Wnt/β-catenin signaling pathway safeguards normal DNA methylation of mESCs. The activity of the pathway is progressively silenced during passages in culture and this results into a loss of the DNA methylation at many imprinting control regions (ICRs), loss of recruitment of chromatin repressors, and activation of retrotransposons, resulting into impaired mESC differentiation. Accordingly, sustained Wnt/β-catenin signaling maintains normal ICR methylation and mESC homeostasis and is a key regulator of genome stability.
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BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
An integrated encyclopedia of DNA elements in the human genome
Establishment in culture of pluripotential cells from mouse embryos
Martin Evans, M. H. Kaufman · Nature · 1981 · 8.6K citations
Initial sequencing and comparative analysis of the mouse genome