Translational Psychiatry · 2019 · 15 citations · 28 references
Life SciencesMolecular GeneticsNeuroscienceGene ExpressionMolecular NeuroscienceTranscriptional RegulationNeuropsychiatric GeneticsPsychiatric GeneticsPsychological StressStress ResponsesStress-induced Gene ExpressionStress-responsive Gene RegulationEarly-life ConditionsEarly-life StressGenetic Risk For DepressionGenetic Risk VariantsGlucocorticoid SignalingMajor Depressive Disorder GeneticsRisk Gene VariantsStress-related Gene Expression
Early-life adversity is an important risk factor for major depressive disorder (MDD) and schizophrenia (SCZ) that interacts with genetic factors to confer disease risk through mechanisms that are still insufficiently understood. One downstream effect of early-life adversity is the activation of glucocorticoid receptor (GR)-dependent gene networks that drive acute and long-term adaptive behavioral and cellular responses to stress. We have previously shown that genetic variants that moderate GR-induced gene transcription (GR-response eSNPs) are significantly enriched among risk variants from genome-wide association studies (GWASs) for MDD and SCZ. Here, we show that the 63 transcripts regulated by these disease-associated functional genetic variants form a tight glucocorticoid-responsive co-expression network (termed GCN). We hypothesized that changes in the correlation structure of this GCN may contribute to early-life adversity-associated disease risk. Therefore, we analyzed the effects of different qualities of social support and stress throughout life on GCN formation across distinct brain regions using a translational mouse model. We observed that different qualities of social experience substantially affect GCN structure in a highly brain region-specific manner. GCN changes were predominantly found in two functionally interconnected regions, the ventral hippocampus and the hypothalamus, two brain regions previously shown to be of relevance for the stress response, as well as psychiatric disorders. Overall, our results support the hypothesis that a subset of genetic variants may contribute to risk for MDD and SCZ by altering circuit-level effects of early and adult social experiences on GCN formation and structure.
28
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Edward Y. Chen, Christopher M. Tan, Yan Kou et al. · BMC Bioinformatics · 2013 · 8.4K citations · Full text
KEGG as a reference resource for gene and protein annotation
Minoru Kanehisa, Yoko Sato, Masayuki Kawashima et al. · Nucleic Acids Research · 2015 · 7.9K citations · Full text