Perspectives in Plant Ecology Evolution and Systematics · 2019 · 18 citations · 54 references
Life SciencesBotanyEvolutionary BiologyPhylogeneticsPlant EvolutionPlant SystematicsEvolutionary RelationshipsInsect PhylogeneticsInsect PhylogenyPhylogenetic InferencePhylogenetic Tree ReconstructionPlant PhylogenyModel-based Phylogenetic AnalysisModel-based Phylogenetic InferencePhylogenetic CongruencePhylogenetic Diversification ModelsPhylogenetic Diversity AnalysisPhylogenetic TaxonomyPhylogenetic Tree Inference
54
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
MRBAYES: Bayesian inference of phylogenetic trees
John P. Huelsenbeck, Fredrik Ronquist · Bioinformatics · 2001 · 22.2K citations · Full text