bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 12 citations · 59 references
Life SciencesNeurobiologyNeuroscienceCognitive NeuroscienceNeural CircuitrySystems NeuroscienceNeural Circuit DynamicsNeural Circuit ModelingNeural CircuitsNeural System ModelingNeuronal DynamicsSleep BehaviorAttractor DynamicsAttractor NetworksContinuous Attractor NetworksHead Direction CodingLow-dimensional Neural DynamicsLow-dimensional Neural ManifoldsSleep CircuitsSleep-wake Circuitry
Abstract The brain constructs distributed representations of key low-dimensional variables. These variables may be external stimuli or internal constructs of quantities relevant for survival, such as a sense of one’s location in the world. We consider that the high-dimensional population-level activity vectors are the fundamental representational currency of a neural circuit, and these vectors trace out a low-dimensional manifold whose dimension and topology matches those of the represented variable. This manifold perspective — applied to the mammalian head direction circuit across rich waking behaviors and sleep — enables powerful inferences about circuit representation and mechanism, including: Direct visualization and blind discovery that the network represents a one-dimensional circular variable across waking and REM sleep; fully unsupervised decoding of the coded variable; stability and attractor dynamics in the representation; the discovery of new dynamical trajectories during sleep; the limiting role of external rather than internal noise in the fidelity of memory states; and the conclusion that the circuit is set up to integrate velocity inputs according to classical continuous attractor models.
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Auto-Encoding Variational Bayes
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