Journal of Chemical Theory and Computation · 2019 · 112 citations · 44 references
Natural SciencesBiophysicsPhysicsLipid BiochemistryMembrane BiophysicsMolecular BiophysicsBiological MembranesLipid Bilayer StructureLipid BilayersMembrane DynamicsMembrane HeterogeneityMolecular DynamicsCholesterol-lipid InteractionsCholesterol-membrane InteractionsLateral HeterogeneityLateral Membrane HeterogeneityLipid Bilayer DynamicsLipid Flip-flopMembrane Cholesterol DistributionMolecular Dynamics Of Lipid Membranes
Cholesterol is the most abundant molecule in the plasma membrane of mammals. Its distribution across the two membrane leaflets is critical for understanding how cells work. Cholesterol trans-bilayer motion (flip-flop) is a key process influencing its distribution in membranes. Despite extensive investigations, the rate of cholesterol flip-flop and its dependence on the lateral heterogeneity of membranes remain uncertain. In this work, we used atomistic molecular dynamics simulations to sample spontaneous cholesterol flip-flop events in a DPPC:DOPC:cholesterol mixture with heterogeneous lateral distribution of lipids. In addition to an overall flip-flop rate at the time scale of sub-milliseconds, we identified a significant impact of local environment on flip-flop rate. We discuss the atomistic details of the flip-flop events observed in our simulations.
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
Canonical sampling through velocity rescaling
Giovanni Bussi, Davide Donadio, Michele Parrinello · The Journal of Chemical Physics · 2007 · 18.4K citations · Full text
Natural Sciences, Chemistry, Physics +17