Horizontal gene transfer and shifts in linked bacterial community composition are associated with maintenance of antibiotic resistance genes during food waste composting

Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

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Metagenomic biomarker discovery and explanation

Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text

Life Sciences, Bioinformatics, Microbiology +10

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

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Integration of biological networks and gene expression data using Cytoscape

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Life Sciences, Bioinformatics, Molecular Biology +14

Soil biodiversity and soil community composition determine ecosystem multifunctionality

Cameron Wagg, S. Franz Bender, Franco Widmer et al. · Proceedings of the National Academy of Sciences · 2014 · 2.5K citations · Full text

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