Protein & Cell · 2018 · 144 citations · 63 references
Life SciencesInfectious DiseasesMicrobiologyDiagnostic MicrobiologyMedical MicrobiologyMicrobiome ResearchGastrointestinal Pathogen DiagnosticsGut MicrobiotaMicrobiological AnalysisMicrobiome BiomarkersBiomarker DetectionCancer-associated Microbiome BiomarkersDiagnostic Microbiome BiomarkersGastrointestinal Disease BiomarkersHuman Gastric FluidMicrobial Community MetabolismMicrobiome-based Diagnosis
The development of gastritis is associated with an increased risk of gastric cancer. Current invasive gastritis diagnostic methods are not suitable for monitoring progress. In this work based on 78 gastritis patients and 50 healthy individuals, we observed that the variation of tongue-coating microbiota was associated with the occurrence and development of gastritis. Twenty-one microbial species were identified for differentiating tongue-coating microbiomes of gastritis and healthy individuals. Pathways such as microbial metabolism in diverse environments, biosynthesis of antibiotics and bacterial chemotaxis were up-regulated in gastritis patients. The abundance of Campylobacter concisus was found associated with the gastric precancerous cascade. Furthermore, Campylobacter concisus could be detected in tongue coating and gastric fluid in a validation cohort containing 38 gastritis patients. These observations provided biological evidence of tongue diagnosis in traditional Chinese medicine, and indicated that tongue-coating microbiome could be a potential non-invasive biomarker, which might be suitable for long-term monitoring of gastritis.
63
Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower, J. Fah Sathirapongsasuti, Nicola Segata et al. · Nature · 2012 · 11.9K citations · Full text
Life Sciences, Biology, Microbiology +17
CD-HIT: accelerated for clustering the next-generation sequencing data
LiMin Fu, Beifang Niu, Zhengwei Zhu et al. · Bioinformatics · 2012 · 11.8K citations · Full text
Life Sciences, Bioinformatics, High-performance Computing +12
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin, Ruiqiang Li, Jeroen Raes et al. · Nature · 2010 · 11.7K citations · Full text