OMIM.org: leveraging knowledge across phenotype–gene relationships

TLDR

Mendelian Inheritance in Man has documented medical genetics for over five decades, evolving into the primary curated repository of genes, phenotypes, and their relationships. OMIM.org assigns stable identifiers to each phenotype and gene, offers structured expert‑reviewed summaries, interactive genomic searches, phenotypic series views, API access, and extensive cross‑links, with continuous updates and user guides. By September 2018, OMIM contained more than 24,600 entries, linking 6,259 molecularized phenotypes to 3,961 genes.

Abstract

For over 50 years Mendelian Inheritance in Man has chronicled the collective knowledge of the field of medical genetics. It initially cataloged the known X-linked, autosomal recessive and autosomal dominant inherited disorders, but grew to be the primary repository of curated information on both genes and genetic phenotypes and the relationships between them. Each phenotype and gene is given a separate entry assigned a stable, unique identifier. The entries contain structured summaries of new and important information based on expert review of the biomedical literature. OMIM.org provides interactive access to the knowledge repository, including genomic coordinate searches of the gene map, views of genetic heterogeneity of phenotypes in Phenotypic Series, and side-by-side comparisons of clinical synopses. OMIM.org also supports computational queries via a robust API. All entries have extensive targeted links to other genomic resources and additional references. Updates to OMIM can be found on the update list or followed through the MIMmatch service. Updated user guides and tutorials are available on the website. As of September 2018, OMIM had over 24,600 entries, and the OMIM Morbid Map Scorecard had 6,259 molecularized phenotypes connected to 3,961 genes.