mSphere · 2018 · 53 citations · 34 references
Life SciencesMicrobiologyMolecular BiologyAntimicrobial ResistanceBacteriologyEnvironmental MicrobiologyAntibiotic ResistanceAntibiotic Resistance GeneticsAntimicrobial Resistance GenomicsCarbapenem ResistancePathogen DetectionPathogen GenomicsAntimicrobial Resistance Gene DetectionAntimicrobial Resistance MonitoringAntimicrobial Resistance PatternsEnterobacteriaceae DetectionKlebsiella Pneumoniae CarbapenemaseSewage Treatment SystemsWastewater Treatment PlantsWastewater Treatment Processes
We isolated and determined the complete genome sequence of a KPC-2-producing K. pneumoniae strain from a sampling site in Tokyo Bay, Japan, near a wastewater treatment plant (WWTP). In Japan, the KPC type has been very rarely detected, while IMP is the most predominant type of carbapenemase in clinical carbapenemase-producing Enterobacteriaceae (CPE) isolates. Although laboratory testing thus far suggested that Japan may be virtually free of KPC-producing Enterobacteriaceae , we have detected it from effluent from a WWTP. Antimicrobial resistance (AMR) monitoring of WWTP effluent may contribute to the early detection of future AMR bacterial dissemination in clinical settings and communities; indeed, it will help illuminate the whole picture in which environmental contamination through WWTP effluent plays a part.
34
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations
Bruce J. Walker, Thomas Abeel, Terrance Shea et al. · PLoS ONE · 2014 · 10.2K citations · Full text
Identification of acquired antimicrobial resistance genes
Ea Zankari, Henrik Hasman, Salvatore Cosentino et al. · Journal of Antimicrobial Chemotherapy · 2012 · 5.2K citations · Full text
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan, Nicola K. Petty, Scott A. Beatson · Bioinformatics · 2011 · 3.7K citations · Full text