The Journal of Organic Chemistry · 2018 · 20 citations · 41 references
Natural SciencesBiochemistryChemistryCatalysisChemical KineticsComputational ChemistryAddition ReactionsCatalytic MechanismsCatalytic Reaction KineticsChemical Reaction KineticsKinetic Isotope EffectsReaction MechanismsAcid CatalysisConcerted Proton TransferGeneral Acid CatalysisIonic Strength EffectsProton Transfer ReactionsSolvent EffectsSolvent Kinetic Isotope EffectStepwise Proton Transfer
A mechanistic study was undertaken to elucidate the reaction pathways for thiol addition to N-methylmaleimide in water. We used linear free energy relationships, solvent kinetic isotope effects (SKIEs), activation parameters, and ionic strength effects to probe the nature of the rate-limiting transition states. Calculations were also employed and assisted in illuminating three possible mechanistic pathways: (1) stepwise addition with rate-limiting nucleophilic attack, (2) stepwise addition with rate-limiting proton transfer, and (3) concerted addition with nucleophilic attack and proton transfer occurring concurrently. Alkyl thiolate addition exhibits βnucRS−= 0.4, small negative ΔS‡ values, prominent ionic strength effects, and no evidence of general acid catalysis, consistent with pathway 1. Aryl thiolate addition exhibited βnucArS− = 1.0, large negative ΔS‡ values, normal primary SKIEs, general acid catalysis, and negligible sensitivity to ionic strength, consistent with pathways 2 and 3. The experimental and computational data depict an energy surface where ground state effects, namely the energy of the alkyl/aryl thiolate, play a major role in shaping the governing pathway. Application of these findings to bioconjugation chemistry is also discussed.
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Aleksandr V. Marenich, Christopher J. Cramer, Donald G. Truhlar · The Journal of Physical Chemistry B · 2009 · 17.4K citations · Full text
Natural Sciences, Chemistry, Physics +17