Transboundary and Emerging Diseases · 2018 · 43 citations · 40 references
Veterinary MedicineInfectious DiseasesVeterinary EpidemiologyOutbreak InvestigationSwine MedicineVirologyAnimal Infectious DiseasesSwine DiseaseSwine HealthSwine Infectious DiseasesSwine VirologyViral EpidemiologyDisease Spread DynamicsEpidemic Disease SpreadEpidemic SpreadingLivestock Viral DiseasesMortality RatesPorcine Infectious DiseasesPorcine VirologyReal-time Polymerase Chain Reaction (Pcr)
Porcine Epidemic Diarrhoea Virus (PEDV) causes watery diarrhoea, dehydration, and a high mortality rate among suckling pigs. Recently, PEDV had a large negative economic impact on the swine industries in Asia and North America. In 2014, PEDV re-emerged in many European countries, but most countries only reported a few sporadic cases. Here, we report the epidemic wave that occurred in Italy from 2015 to 2017. During this time, PEDV was detected by real-time PCR in 438 farms located mainly in the high-density pig production area in Northern Italy. Most of the outbreaks were in farrow-to-finish, farrow-to-wean and finisher farms. Clinical signs were observed mainly in suckling and fattening animals, while mortality rates were higher in piglets, reaching 50%. A sequence analysis showed that a PEDV strain, similar to the OH851 S-INDEL strain isolated in the USA in January 2014, was responsible for the outbreaks in Italy in 2015 and 2016. However, from January 2017, a recombinant variant strain, containing a portion of the Swine Enteric Coronavirus in the S1 gene, spread and almost completely outcompeted the previous nonrecombinant strain. In total, 14.1% of the environmental swabs collected from trucks at slaughterhouses after animals were unloaded tested positive for PEDV before the trucks were cleaned and disinfected, and 46% remained positive after cleaning and disinfection processes were performed. Moreover, environmental swabs indicated that 17.3% of the empty trucks arriving at the farms to load animals were PEDV-positive. This study indicates that trucks can have an important role in the spread of PEDV in Italy.
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text
Patrick C. Y. Woo, Susanna K. P. Lau, Carol S. F. Lam et al. · Journal of Virology · 2012 · 1.7K citations · Full text