Journal of Virology · 2018 · 51 citations · 37 references
Life SciencesGeneticsMolecular BiologyDna ReplicationMolecular VirologyTranscriptional RegulationAlternative SplicingDna Replication In PlantsPlant Virus ReplicationRna SplicingRna-protein InteractionsSmall Nuclear Rna BiologyNoncoding Rna RegulationNoncoding Rna-mediated RegulationPlant Disease SymptomsRna Splicing Factor InteractionsRna Splicing RegulationRna Splicing Regulation By Noncoding RnaSplicing FactorsSplicing Regulatory Elements
Viroids are the smallest replicons among all living entities. As circular noncoding RNAs, viroids can replicate and spread in plants, often resulting in disease symptoms. Potato spindle tuber viroid (PSTVd), the type species of nuclear-replicating viroids, requires a unique splicing form of transcription factor IIIA (TFIIIA-7ZF) for its propagation. Here, we provide evidence showing that PSTVd directly interacts with a splicing regulator, RPL5, to favor the expression of TFIIIA-7ZF, thereby promoting viroid replication. This finding provides new insights to better understand viroid biology and sheds light on the noncoding RNA-based regulation of splicing. Our discovery also establishes RPL5 as a novel negative factor regulating viroid replication in the nucleus and highlights a potential means for viroid control.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis
Florian Bardou, Federico Ariel, Craig G. Simpson et al. · Developmental Cell · 2014 · 415 citations · Full text