Proceedings of the National Academy of Sciences · 2018 · 65 citations · 42 references
Acid-sensing ion channels (ASICs) have emerged as important, albeit challenging therapeutic targets for pain, stroke, etc. One approach to developing therapeutic agents could involve the generation of functional antibodies against these channels. To select such antibodies, we used channels assembled in nanodiscs, such that the target ASIC1a has a configuration as close as possible to its natural state in the plasma membrane. This methodology allowed selection of functional antibodies that inhibit acid-induced opening of the channel in a dose-dependent way. In addition to regulation of pH, these antibodies block the transport of cations, including calcium, thereby preventing acid-induced cell death in vitro and in vivo. As proof of concept for the use of these antibodies to modulate ion channels in vivo, we showed that they potently protect brain cells from death after an ischemic stroke. Thus, the methodology described here should be general, thereby allowing selection of antibodies to other important ASICs, such as those involved in pain, neurodegeneration, and other conditions.
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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
Sander Pronk, Szilárd Páll, Roland Schulz et al. · Bioinformatics · 2013 · 7.4K citations · Full text
Improved side‐chain torsion potentials for the Amber ff99SB protein force field
Kresten Lindorff‐Larsen, Stefano Piana, Kim Palmö et al. · Proteins Structure Function and Bioinformatics · 2010 · 6.1K citations · Full text
Side‐chain Torsion Potentials, Protein Assembly, Biomolecular Structure Prediction +16