Journal of Biological Chemistry · 2018 · 38 citations · 41 references
Life SciencesBiochemistryMolecular BiologyEnzymologyProtein FoldingProtein-protein InteractionsGlycan RecognitionGlycan-protein InteractionsProtein BindingProtein DegradationProtein StructureDetergent TreatmentEndoplasmic Reticulum-associated DegradationEr-associated DegradationGlycan Recognition DomainsMisfolded Protein AggregationN-glycan RecognitionWeak Protein-protein Interactions
), required for binding under stringent detergent conditions. In addition to the thiol-dependent interaction, the presence of weaker protein-protein interactions was confirmed, suggestive of bipartite client-binding properties. About four reactive thiols on EDEM1 were identified and were not directly responsible for the observed redox-sensitive binding by EDEM1. Moreover, a protein construct comprising the EDEM1 MLD had thiol-dependent binding properties along with its active glycan-trimming activities. Lastly, we identified an additional intrinsically disordered region (IDR) located at the C terminus of EDEM1 in addition to its previously identified N-terminal IDR. We also determined that both IDRs are required for binding to the ERAD component ERdj5 as an interaction with ERdj5 was not observed with the MLD alone. Together, our findings indicate that EDEM1 employs different binding modalities to interact with ERAD clients and ER quality control (ERQC) machinery partners and that some of these properties are shared with its homologues EDEM2 and EDEM3.
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G. Ya. Wiederschain · Biochemistry (Moscow) · 2009 · 4.1K citations · Full text
DisProt: the Database of Disordered Proteins
Megan D. Sickmeier, John A. Hamilton, Tanguy LeGall et al. · Nucleic Acids Research · 2006 · 810 citations · Full text
The DISOPRED server for the prediction of protein disorder
Jonathan J. Ward, Liam J. McGuffin, Kevin Bryson et al. · Bioinformatics · 2004 · 706 citations · Full text