Infection and Immunity · 2018 · 61 citations · 88 references
Life SciencesGeneticsMicrobiologyHost-pathogen InteractionsMedical MicrobiologyMicrobial GeneticsBacterial GeneticsBacterial InfectionsBacterial PathogenesisBacterial Virulence FactorsMicrobial Virulence FactorsVirulence Gene RegulationBacterial MutationDisease VirulenceGenome PlasticityGenomic PlasticityOptimal VirulencePhenotypic Plasticity In VirulenceVirulence DeterminantsVirulence Reversion
Therapy for bacteremia caused by Staphylococcus aureus is often ineffective, even when treatment conditions are optimal according to experimental protocols. Adapted subclones, such as those bearing mutations that attenuate agr -mediated virulence activation, are associated with persistent infection and patient mortality.
88
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text