mSphere · 2018 · 237 citations · 39 references
Life SciencesInfectious DiseasesMicrobiologyBacteriologyGenomicsMedical MicrobiologyAntibiotic ResistanceBacterial EpidemiologyBacterial GeneticsBacterial InfectionsCarbapenem ResistanceMicrobial Evolutionary GenomicsAntimicrobial Resistance PatternsCarbapenemase EnzymesEscherichia ColiEscherichia Coli ResistanceMolecular Evolution Of PathogensPhylogenetic Analysis Of PathogensPhylogenetic Analysis Of Resistant IsolatesResistance Clones
Extraintestinal pathogenic Escherichia coli (ExPEC) is the main cause of urinary tract infections and septicemia. Significant attention has been given to the ExPEC sequence type ST131, which has been categorized as a “high-risk” clone. High-risk clones are globally distributed clones associated with various antimicrobial resistance determinants, ease of transmission, persistence in hosts, and effective transmission between hosts. The high-risk clones have enhanced pathogenicity and cause severe and/or recurrent infections. We show that clones of the E. coli ST410 lineage persist and/or cause recurrent infections in humans, including bloodstream infections. We found evidence of ST410 being a highly resistant globally distributed lineage, capable of patient-to-patient transmission causing hospital outbreaks. Our analysis suggests that the ST410 lineage should be classified with the potential to cause new high-risk clones. Thus, with the clonal expansion over the past decades and increased antimicrobial resistance to last-resort treatment options, ST410 needs to be monitored prospectively.
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BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text
Robert E. Kass, Adrian E. Raftery · Journal of the American Statistical Association · 1995 · 12.3K citations
Natural Sciences, Behavioral Sciences, Bayesian Biostatistics +11