Science · 2018 · 378 citations · 74 references
Life SciencesEvolutionary BiologyGeneticsEvolutionary EcologyMolecular EvolutionPopulation GeneticsAllopatric SpeciationCharacter EvolutionLocal AdaptationNatural SelectionSpeciation GeneticsAdaptive IntrogressionCis-regulatory EvolutionCis-regulatory ModulesEcological TraitsGenetic Adaptation To ClimateRegulatory VariationSpecies Seasonal AdaptationTrait Evolution Models
clustered by winter coat color across multiple hare and jackrabbit species, revealing a history of recurrent interspecific gene flow. Brown winter coats in snowshoe hares likely originated from an introgressed black-tailed jackrabbit allele that has swept to high frequency in mild winter environments. These discoveries show that introgression of genetic variants that underlie key ecological traits can seed past and ongoing adaptation to rapidly changing environments.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text