The first two mitochondrial genomes of the family Aphelinidae with novel gene orders and phylogenetic implications

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 48.3K citations · Full text

Life Sciences, Bioinformatics, Genomic Data Analysis +11

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura, Glen Stecher, Daniel S. Peterson et al. · Molecular Biology and Evolution · 2013 · 47.9K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

Robert Lanfear, Brett Calcott, Simon Y. W. Ho et al. · Molecular Biology and Evolution · 2012 · 5.8K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

MITOS: Improved de novo metazoan mitochondrial genome annotation

Matthias Bernt, Alexander Donath, Frank Jühling et al. · Molecular Phylogenetics and Evolution · 2012 · 5.5K citations

Life Sciences, Bioinformatics, Molecular Biology +9

IDBA-UD: a <i>de novo</i> assembler for single-cell and metagenomic sequencing data with highly uneven depth

Yu Peng, Henry C. M. Leung, Siu‐Ming Yiu et al. · Bioinformatics · 2012 · 3.2K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17