Concepedia

Transcriptome-wide identification and characterization of the copper and cadmium stress-responsive small RNAs and their targets in Arabidopsis thaliana

Xiaoxia Ma, Dongliang Yu, Weishan Shao, Min Xu, Ziwei Zuo, Huizhong Wang, Yijun Meng

Plant and Soil · 2018 · 11 citations · 26 references

Concepts

Life SciencesPlant BiologyPlant SciencesGene ExpressionPlant Molecular BiologyTranscriptomicsPlant Gene ExpressionPlant Small Rna BiologyPlant Transcriptional RegulationPlant TranscriptomicsTranscriptome AnnotationTranscriptomics Of Stress ResponsesAbiotic Stress TranscriptomicsSmall Rna AnnotationSmall Rna SequencingSmall Rna Target PredictionStress-responsive Small Rna RegulationTranscription Factors In Stress ResponseTranscriptome-wide Untranslated Region Analysis

References

26

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +15

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Magali Lescot · Nucleic Acids Research · 2002 · 8.4K citations · Full text

Life Sciences, Bioinformatics, Plant Biology +17

miRBase: integrating microRNA annotation and deep-sequencing data

Ana Kozomara, Sam Griffiths‐Jones · Nucleic Acids Research · 2010 · 3.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

agriGO: a GO analysis toolkit for the agricultural community

Zhou Du, Xin Zhou, Yi Ling et al. · Nucleic Acids Research · 2010 · 2.5K citations · Full text

Life Sciences, Bioinformatics, Biology +13

psRNATarget: a plant small RNA target analysis server

Xinbin Dai, Patrick X. Zhao · Nucleic Acids Research · 2011 · 1.9K citations · Full text

Life Sciences, Bioinformatics, Plant Biology +17