Scientific Reports · 2018 · 22 citations · 58 references
Life SciencesMolecular BiologyOncologyGene ExpressionMolecular OncologyTranscriptional RegulationAndrogen PhysiologyCancer Cell SignalingCancer TranscriptomicsDifferential Gene Expression AnalysisHormonal Gene RegulationSteroid Hormone SignalingAndrogen Receptor ExpressionAndrogen Receptor RegulationAndrogen ReceptorsDifferential Gene ExpressionDifferential Transcript ExpressionProstate Cancer Hormonal TherapyRna Sequencing (Rna-seq)Transcripts
Treatment of mice harboring PTEN-P2 tumors in the prostate or on prostate tissue in vivo with 5-hydroxy-2-methyl-1,4-naphthoquinone, also known as plumbagin, results in tumor regression in castrated mice, but not in intact mice. This suggested that dihydrotestosterone (DHT) production in the testes may prevent cell death due to plumbagin treatment, but the underlying mechanism is not understood. We performed RNA-seq analysis on cells treated with combinations of plumbagin and DHT, and analyzed differential gene expression, to gain insight into the interactions between androgen and plumbgin. DHT and plumbagin synergize to alter the expression of many genes that are not differentially regulated by either single agent when used alone. These experiments revealed that, for many genes, increases in mRNAs caused by DHT are sharply down-regulated by plumbagin, and that many transcripts change in response to plumbagin in a DHT-dependent manner. This suggests that androgen receptor mediates some of the effects of plumbagin on gene expression.
58
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Gene Ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 44.6K citations · Full text
The Reactome pathway Knowledgebase
Antonio Fabregat, Konstantinos Sidiropoulos, Phani Garapati et al. · Nucleic Acids Research · 2015 · 6K citations · Full text
Gene Ontology Consortium: going forward
Nucleic Acids Research · 2014 · 3.7K citations · Full text