Concepedia

Whole-genome sequencing enabling the detection of a colistin-resistant hypermutating Citrobacter werkmanii strain harbouring a novel metallo-β-lactamase VIM-48

Silke Peter, Daniela Bezdan, Philipp Oberhettinger, Wichard Vogel, Daniela Dörfel, Julia Dick, Matthias Marschal, Jan Liese, Christopher Weidenmaier, Ingo B. Autenrieth,

International Journal of Antimicrobial Agents · 2018 · 17 citations · 33 references

DOI

Concepts

References

33

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

, , +17

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

, , +12

Clustal W and Clustal X version 2.0

Mark Larkin, Gordon Blackshields, Nigel P. Brown et al. · Bioinformatics · 2007 · 29.1K citations · Full text

, , +7

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13