Microbial Biotechnology · 2018 · 33 citations · 39 references
Life SciencesBiochemistryBiotechnologyBiocatalysisEnzymologyMycologyEnzyme CharacterizationEnzyme ClassificationEnzyme DiscoveryFungal BiochemistryGlycan DegradationPlant EnzymesCarbohydrate-active EnzymesEnzymesEsterasesFungal EnzymologyHydrolytic EnzymesLignocellulosic Biomass DegradationPlant Cell Wall DegradationSequence Similarity
Feruloyl esterases (FAEs) are accessory enzymes for plant biomass degradation, which catalyse hydrolysis of carboxylic ester linkages between hydroxycinnamic acids and plant cell-wall carbohydrates. They are a diverse group of enzymes evolved from, e.g. acetyl xylan esterases (AXEs), lipases and tannases, thus complicating their classification and prediction of function by sequence similarity. Recently, an increasing number of fungal FAEs have been biochemically characterized, owing to their potential in various biotechnological applications and multitude of candidate FAEs in fungal genomes. However, only part of the fungal FAEs are included in Carbohydrate Esterase family 1 (CE1) of the carbohydrate-active enzymes (CAZy) database. In this work, we performed a phylogenetic analysis that divided the fungal members of CE1 into five subfamilies of which three contained characterized enzymes with conserved activities. Conservation within one of the subfamilies was confirmed by characterization of an additional CE1 enzyme from Aspergillus terreus. Recombinant A. terreus FaeD (AtFaeD) showed broad specificity towards synthetic methyl and ethyl esters, and released ferulic acid from plant biomass substrates, demonstrating its true FAE activity and interesting features as potential biocatalyst. The subfamily division of the fungal CE1 members enables more efficient selection of candidate enzymes for biotechnological processes.
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41.5K citations · Full text
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard, Hemalatha Golaconda Ramulu, Élodie Drula et al. · Nucleic Acids Research · 2013 · 6.5K citations · Full text
Carbohydrate analysis by a phenol–sulfuric acid method in microplate format
Tatsuya Masuko, Akio Minami, Norimasa Iwasaki et al. · Analytical Biochemistry · 2004 · 2.3K citations
Pharmacy, Biochemistry, Chemistry +13