Concepedia
Publication | Open Access
The Immune Landscape of Cancer
6K
Citations
89
References
2018
Year
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin
Bioinformatics
2009
60.7K
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, +8
Proceedings of the National Academy of Sciences
GeneticsGenomicsGene RecognitionBioinformatics DatabaseGene Expression Profiling +21
2005
54.5K
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger, +6
2012
53.2K
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath
BMC Bioinformatics
2008
27.8K
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li, Colin N. Dewey
2011
22.5K
Regularization Paths for Generalized Linear Models via Coordinate Descent
Jerome H. Friedman, Trevor Hastie, Robert Tibshirani
Journal of Statistical Software
EngineeringMachine LearningRegularization PathHigh-dimensional MethodConvex Optimization +9
2010
16.3K
GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Hänzelmann, Robert Castelo, Justin Guinney
2013
15.6K
Regularization Paths for Generalized Linear Models via Coordinate Descent.
Jerome H. Friedman, Trevor Hastie, Rob Tibshirani
PubMed
EngineeringMachine LearningHigh-dimensional MethodConvex OptimizationConvex Penalties +8
14K
Robust enumeration of cell subsets from tissue expression profiles
Aaron M. Newman, Chih Long Liu, Michael R. Green, +6
Nature Methods
EngineeringMedicineComputational BiologyRobust EnumerationGene Expression Profiling +6
2015
13.6K
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, +6
Nucleic Acids Research
11.1K
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