Concepedia

Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics

Ryan Peckner, Samuel A. Myers, Alvaro Sebastian Vaca Jácome, Jarrett D. Egertson, Jennifer G. Abelin, Michael J. MacCoss, Steven A. Carr, Jacob D. Jaffe

Nature Methods · 2018 · 88 citations · 26 references

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26

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 5K citations · Full text

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Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Juri Rappsilber, Matthias Mann, Yasushi Ishihama · Nature Protocols · 2007 · 4.9K citations

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2016 update of the PRIDE database and its related tools

Juan Antonio Vizcaíno, Attila Csordás, Noemí del‐Toro et al. · Nucleic Acids Research · 2015 · 3.7K citations · Full text

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Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Ludovic Gillet, Pedro Navarro, Stephen Tate et al. · Molecular & Cellular Proteomics · 2012 · 3K citations · Full text

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Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues

Roland Bruderer, Oliver M. Bernhardt, Tejas Gandhi et al. · Molecular & Cellular Proteomics · 2015 · 1.3K citations · Full text

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