Molecular Characterization of IMP-1-Producing Enterobacter cloacae Complex Isolates in Tokyo

Abstract

Although KPC enzymes are most common among carbapenemases produced by <i>Enterobacter cloacae</i> complex globally, the epidemiology varies from one country to another. While previous studies have suggested that IMP enzymes are most common in Japan, detailed analysis has been scarce thus far. Here, we carried out a molecular epidemiological study and plasmid analysis of IMP-1-producing <i>E. cloacae</i> complex isolates collected from three hospitals in central Tokyo using whole-genome sequencing. Seventy-one isolates were classified into several sequence types (STs), and 49 isolates were identified as <i>Enterobacter hormaechei</i> ST78. Isolates of ST78 were divided into three clades by core-genome single nucleotide polymorphism (SNP)-based phylogenetic analysis. Whereas isolates of clade 3 were isolated from only one hospital, isolates of clade 1 and 2 were identified from multiple hospitals. Ten of 12 clade 1 isolates and 1 of 4 clade 2 isolates carried <i>bla</i>_IMP-1 on IncHI2 plasmids, with high similarity of genetic structures. In addition, these plasmids shared backbone structures with IncHI2 plasmids carrying <i>bla</i>_IMP reported from other countries of the Asia-Pacific region. All isolates of clade 3 except one carried <i>bla</i>_IMP-1 in In1426 on IncW plasmids. An isolate of clade 3, which lacked IncW plasmids, carried <i>bla</i>_IMP-1 in In1426 on an IncFIB plasmid. These observations suggest that IMP-producing <i>E. cloacae</i> complex isolates with a diversity of host genomic backgrounds have spread in central Tokyo, and they indicate the possible contribution of IncHI2 plasmids toward this phenomenon.