Chemical Science · 2018 · 523 citations · 85 references
Natural SciencesChemistryPhysicsComputational ChemistryPhysical ChemistryTheoretical ChemistryAb Initio MethodsAtomistic ModelingDensity Functional TheoryInteratomic PotentialsMolecular ModelingMolecular SimulationInteratomic Potential ModelsMachine Learning Potential Energy SurfacesMachine Learning PotentialsMachine-learned Interatomic PotentialsMolecular RepresentationsNeural Network ModelingQuantum Chemical ModelingVan Der Waals Interactions
accuracy at low cost. However a data-driven approach is naturally inefficient for long-range interatomic forces that have simple physical formulas. In this manuscript we construct a hybrid model chemistry consisting of a nearsighted neural network potential with screened long-range electrostatic and van der Waals physics. This trained potential, simply dubbed "TensorMol-0.1", is offered in an open-source Python package capable of many of the simulation types commonly used to study chemistry: geometry optimizations, harmonic spectra, open or periodic molecular dynamics, Monte Carlo, and nudged elastic band calculations. We describe the robustness and speed of the package, demonstrating its millihartree accuracy and scalability to tens-of-thousands of atoms on ordinary laptops. We demonstrate the performance of the model by reproducing vibrational spectra, and simulating the molecular dynamics of a protein. Our comparisons with electronic structure theory and experimental data demonstrate that neural network molecular dynamics is poised to become an important tool for molecular simulation, lowering the resource barrier to simulating chemistry.
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Dropout: a simple way to prevent neural networks from overfitting
Nitish Srivastava, Geoffrey E. Hinton, Alex Krizhevsky et al. · 2014 · 34.3K citations