Journal of Medical Virology · 2017 · 26 citations · 25 references
Life SciencesInfectious DiseasesMicrobiologyMedical MicrobiologyMolecular VirologyVirologyEmerging Viral DiseasesViral EpidemiologyViral GenomicsViral InfectionsViral PathogenesisVirus ClassificationAcute Febrile IllnessClade DelimitationComparative Viral PhylogeneticsCoxsackievirus InfectionsHand-foot-mouth DiseaseMolecular Epidemiology Of VirusesPhylogenetic Character AnalysisVirus Evolutionary Relationships
Hand, foot, and mouth disease (HFMD) is an acute febrile illness characterized by fever; sore throat; and vesicular eruptions on the hands, feet, and oral mucosa. Until 2010, HFMD was predominantly associated with enterovirus (EV) A71 and coxsackievirus (CV) A16 in Japan. In 2011, CV-A6 emerged as a primary causative agent, causing the largest HFMD epidemic in Japan since 1981. Since then, CV-A6 has caused large HFMD epidemics every 2 years. The phylogenetic analysis of complete Viral Protein 1 (VP1) sequences revealed that most CV-A6 strains detected from 2011 to 2015 in Osaka City were classified into a different clade compared with CV-A6 strains detected from 1999 until 2009. The majority of CV-A6 strains detected in 2011 and most CV-A6 strains detected from 2013 to 2015 were mainly divided into two distinct genetic groups. Each epidemic strain carried unique amino acid substitutions in the presumed DE, EF, and GH loops of the VP1 protein that is exposed on the surface of the virion. There is a possibility that the appearance of substitutions on the surface of the virion and an accumulation of a susceptible population are significant factors in recent HFMD epidemics.
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Typing of Human Enteroviruses by Partial Sequencing of VP1
M. Steven Oberste, Kaija Maher, David R. Kilpatrick et al. · Journal of Clinical Microbiology · 1999 · 593 citations · Full text
The viruses and their replication
Brett D. Lindenbach · Medical Entomology and Zoology · 2007 · 555 citations