ILAR Journal · 2016 · 158 citations · 68 references
EngineeringGeneticsGenetic EpidemiologyGene CharacterizationDisease Gene IdentificationBioinformatics DatabaseAnimal ModelsDisease ModelsZebrafish ResearchHuman DiseaseModel OrganismsOmicsZebrafish ModelsFunctional GenomicsBioinformaticsBiologyDisease MechanismPathogenesisComputational BiologyComplex DiseaseSystems BiologyMedicine
ZFIN serves as the central repository for zebrafish genetic, genomic, and phenotypic data, and zebrafish orthologs of human disease genes are routinely studied to model disease pathologies. ZFIN aims to support disease‑related research by providing human disease information and annotating zebrafish models of human disease. ZFIN provides disease term pages that list disease names, synonyms, references, publications, and human genes with zebrafish orthologs, and it annotates zebrafish disease models with searchable interfaces and downloadable data. ZFIN’s continuous updates of data types, tools, and searchable disease model annotations enhance researchers’ ability to access and analyze zebrafish models of human disease, benefiting both basic and clinical studies.
The Zebrafish Model Organism Database (ZFIN; https://zfin.org) is the central resource for genetic, genomic, and phenotypic data for zebrafish (Danio rerio) research. ZFIN continuously assesses trends in zebrafish research, adding new data types and providing data repositories and tools that members of the research community can use to navigate data. The many research advantages and flexibility of manipulation of zebrafish have made them an increasingly attractive animal to model and study human disease.To facilitate disease-related research, ZFIN developed support to provide human disease information as well as annotation of zebrafish models of human disease. Human disease term pages at ZFIN provide information about disease names, synonyms, and references to other databases as well as a list of publications reporting studies of human diseases in which zebrafish were used. Zebrafish orthologs of human genes that are implicated in human disease etiology are routinely studied to provide an understanding of the molecular basis of disease. Therefore, a list of human genes involved in the disease with their corresponding zebrafish ortholog is displayed on the disease page, with links to additional information regarding the genes and existing mutations. Studying human disease often requires the use of models that recapitulate some or all of the pathologies observed in human diseases. Access to information regarding existing and published models can be critical, because they provide a tractable way to gain insight into the phenotypic outcomes of the disease. ZFIN annotates zebrafish models of human disease and supports retrieval of these published models by listing zebrafish models on the disease term page as well as by providing search interfaces and data download files to access the data. The improvements ZFIN has made to annotate, display, and search data related to human disease, especially zebrafish models for disease and disease-associated gene information, should be helpful to researchers and clinicians considering the use of zebrafish to study human disease.
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The zebrafish reference genome sequence and its relationship to the human genome
Kerstin Howe, Matthew D. Clark, Carlos Torroja et al. · Nature · 2013 · 5K citations · Full text
Efficient genome editing in zebrafish using a CRISPR-Cas system
Woong Y. Hwang, Yanfang Fu, Deepak Reyon et al. · Nature Biotechnology · 2013 · 3K citations · Full text
Effective targeted gene ‘knockdown’ in zebrafish
Aidas Nasevicius, Stephen C. Ekker · Nature Genetics · 2000 · 2.5K citations
Zebrafish <i>hox</i> Clusters and Vertebrate Genome Evolution
Angel Amores, Allan Force, Yi‐Lin Yan et al. · Science · 1998 · 1.7K citations