Concepedia

Mapping genome-wide transcription-factor binding sites using DAP-seq

Anna Bartlett, Ronan C. O’Malley, Shao‐shan Carol Huang, Mary Galli, Joseph R. Nery, Andrea Gallavotti, Joseph R. Ecker

Nature Protocols · 2017 · 711 citations · 33 references

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33

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba et al. · Nature Methods · 2013 · 7K citations · Full text

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HaloTag: A Novel Protein Labeling Technology for Cell Imaging and Protein Analysis

Georgyi V. Los, Lance P. Encell, Mark G. McDougall et al. · ACS Chemical Biology · 2008 · 2.6K citations

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