Physical Review Letters · 2017 · 40 citations · 54 references
Natural SciencesBiophysicsPhysicsMolecular BiophysicsProtein BiochemistryStructural BiophysicsConformational DynamicsHydration EffectsMolecular DynamicsNeutron ScatteringProtein DynamicsProtein StructureIncoherent ScatteringProtein - Water InteractionsProtein Conformational ChangesProtein Conformational DynamicsProtein Dynamics AnalysisProtein MotionsProtein Structural ChangesProtein Vibrational Dynamics
Water is widely assumed to be essential for protein dynamics and function. In particular, the well-documented "dynamical" transition at ∼200 K, at which the protein changes from a rigid, nonfunctional form to a flexible, functional state, as detected in hydrogenated protein by incoherent neutron scattering, requires hydration. Here, we report on coherent neutron scattering experiments on perdeuterated proteins and reveal that a transition occurs in dry proteins at the same temperature resulting primarily from the collective heavy-atom motions. The dynamical transition discovered is intrinsic to the energy landscape of dry proteins.
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
Canonical sampling through velocity rescaling
Giovanni Bussi, Davide Donadio, Michele Parrinello · The Journal of Chemical Physics · 2007 · 18.4K citations · Full text
Natural Sciences, Chemistry, Physics +17