Transboundary and Emerging Diseases · 2017 · 165 citations · 18 references
PhylogeneticsFoot-and-mouth Disease VirusEmerging Infectious DiseasesGeneticsPathogenesisSenecavirus AColombian Strain ClustersPathologyVirologyEmergent VirusVirus GeneVirus ClassificationVirus PhylogenyMedicineAnimal VirusEpidemiologyPathogen Discovery
In 2015 and 2016, Senecavirus A (SVA) emerged as an infectious disease in Brazil, China and the United States (US). In a Colombian commercial swine farm, vesicles on the snout and coronary bands were reported and tested negative for foot-and-mouth disease virus (FMDv), but positive for SVA. The whole-genome phylogenetic analysis indicates the Colombian strain clusters with the strains from the United States, not with the recent SVA strains from Brazil.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text
Long-read Sequencing, Sequence Assembly, Natural Sciences +7
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Martin Hunt, Astrid Gall, Swee Hoe Ong et al. · Bioinformatics · 2015 · 206 citations · Full text
Fábio A. Vannucci, Daniel Linhares, David Emílio Santos Neves de Barcellos et al. · Transboundary and Emerging Diseases · 2015 · 192 citations