Science Advances · 2017 · 131 citations · 55 references
Life SciencesBiologyMolecular BiologyCoral Reef BiologyCoral Reef EcologyGene ExpressionCoral BleachingHeat Stress ToleranceReef-building Coral BiologyReef-building CoralsStress Response GenesTranscriptomics Of Stress ResponsesEndoplasmic Reticulum StressEndoplasmic Reticulum Stress ResponsesHeat Stress ExposureHeat Stress ResponsesThermal Stress ToleranceTranscriptional Response To StressUnfolded Protein ResponseUnfolded Protein Response Genes
daily for 17 days over a strong tidal cycle that included extreme temperature spikes, and show that increases in temperature above 30.5°C triggered a strong transcriptional response. The transcriptomic time series data allowed us to identify a set of genes with coordinated expression that were activated only on days with strong tides, high temperature, and large diel pH and oxygen changes. The responsive genes are enriched for gene products essential to the unfolded protein response, an ancient cellular response to endoplasmic reticulum stress. After the temporary heat pulses passed, expression of these genes immediately decreased, suggesting that homeostasis was restored to the endoplasmic reticulum. In a laboratory temperature stress experiment, we found that the expression of these environmentally responsive genes increased as corals bleached, showing that the unfolded protein response becomes more intense during more severe stress. Our results point to the unfolded protein response as a first line of defense that acroporid corals use when coping with environmental stress on the reef, thus enhancing our understanding of coral stress physiology during a time of major concern for reefs.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text