mSystems · 2017 · 244 citations · 71 references
Life SciencesBiologyMicrobiologyInflammationMicrobial EcologyMicrobial EvolutionGastrointestinal InflammationGut MicrobiomeGut MicrobiotaHost-microbiome InteractionsMicrobiome DysbiosisMucosal InflammationEffector Secretion SystemsGut Microbiome-host Gene InteractionsGut Microbiota CompositionMicrobial Ecology Of The GutMicrobiota-driven InflammationMucosal MicrobiotaProtein Secretion SystemsSecreted Effector Proteins
Shifts in gut microbiota composition have been associated with intestinal inflammation, but it remains unclear whether inflammation-associated bacteria are commensal or detrimental to their host. Here, we studied the lifestyle of the gut bacterium Mucispirillum schaedleri , which is associated with inflammation in widely used mouse models. We found that M. schaedleri has specialized systems to handle oxidative stress during inflammation. Additionally, it expresses secretion systems and effector proteins and can modify the mucosal gene expression of its host. This suggests that M. schaedleri undergoes intimate interactions with its host and may play a role in inflammation. The insights presented here aid our understanding of how commensal gut bacteria may be involved in altering susceptibility to disease.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
KEGG: Kyoto Encyclopedia of Genes and Genomes
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