Concepedia

Spliced synthetic genes as internal controls in RNA sequencing experiments

Simon A. Hardwick, Wendy Y. Chen, Ted Wong, Ira W. Deveson, James Blackburn, Stacey B. Andersen, Lars K. Nielsen, John S. Mattick, Tim R. Mercer

Nature Methods · 2016 · 163 citations · 48 references

DOI

Concepts

References

48

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

, , +15

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

, , +3

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

, , +17

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

, , +11

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17