Thorax · 2016 · 176 citations · 31 references
MedicineImmunologyPharmacologyInflammationInnate ImmunityPulmonologyChronic Obstructive Pulmonary DiseaseObstructive Lung DiseasePulmonary InflammationRespiratory DiseaseRespiratory MicrobiomeAirway Inflammation ModulationAlveolar Macrophage ResponseAnti-inflammatory MechanismsAntibiotic Effects On The Respiratory MicrobiomeBronchoalveolar Lavage AnalysisLower Airway MicrobiologyLung MicrobiomeMicrobial Metabolites
INTRODUCTION: Azithromycin (AZM) reduces pulmonary inflammation and exacerbations in patients with COPD having emphysema. The antimicrobial effects of AZM on the lower airway microbiome are not known and may contribute to its beneficial effects. Here we tested whether AZM treatment affects the lung microbiome and bacterial metabolites that might contribute to changes in levels of inflammatory cytokines in the airways. METHODS: 20 smokers (current or ex-smokers) with emphysema were randomised to receive AZM 250 mg or placebo daily for 8 weeks. Bronchoalveolar lavage (BAL) was performed at baseline and after treatment. Measurements performed in acellular BAL fluid included 16S rRNA gene sequences and quantity; 39 cytokines, chemokines and growth factors and 119 identified metabolites. The response to lipopolysaccharide (LPS) by alveolar macrophages after ex-vivo treatment with AZM or bacterial metabolites was assessed. RESULTS: Compared with placebo, AZM did not alter bacterial burden but reduced α-diversity, decreasing 11 low abundance taxa, none of which are classical pulmonary pathogens. Compared with placebo, AZM treatment led to reduced in-vivo levels of chemokine (C-X-C) ligand 1 (CXCL1), tumour necrosis factor (TNF)-α, interleukin (IL)-13 and IL-12p40 in BAL, but increased bacterial metabolites including glycolic acid, indol-3-acetate and linoleic acid. Glycolic acid and indol-3-acetate, but not AZM, blunted ex-vivo LPS-induced alveolar macrophage generation of CXCL1, TNF-α, IL-13 and IL-12p40. CONCLUSION: AZM treatment altered both lung microbiota and metabolome, affecting anti-inflammatory bacterial metabolites that may contribute to its therapeutic effects. TRIAL REGISTRATION NUMBER: NCT02557958.
31
Metagenomic biomarker discovery and explanation
Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text
UniProt: a hub for protein information
Nucleic Acids Research · 2014 · 5.3K citations · Full text
Azithromycin for Prevention of Exacerbations of COPD
Richard Albert, John E. Connett, William C. Bailey et al. · New England Journal of Medicine · 2011 · 1.2K citations · Full text