IEEE Transactions on Medical Imaging · 2016 · 417 citations · 43 references
ComputingComputer ScienceRadiologyBiomedical ImagingComputer VisionMachine LearningDeep LearningImage AnnotationImage SegmentationInstance SegmentationMedical Image AnalysisObject DetectionConditional Random Field SegmentationConditional Random FieldsConvolutional Neural Network SegmentationFetal Magnetic Resonance ImagingObject SegmentationWeak SupervisionWeakly Supervised Segmentation
In this paper, we propose DeepCut, a method to obtain pixelwise object segmentations given an image dataset labelled weak annotations, in our case bounding boxes. It extends the approach of the well-known GrabCut [1] method to include machine learning by training a neural network classifier from bounding box annotations. We formulate the problem as an energy minimisation problem over a densely-connected conditional random field and iteratively update the training targets to obtain pixelwise object segmentations. Additionally, we propose variants of the DeepCut method and compare those to a naïve approach to CNN training under weak supervision. We test its applicability to solve brain and lung segmentation problems on a challenging fetal magnetic resonance dataset and obtain encouraging results in terms of accuracy.
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