Genome Announcements · 2016 · 36 citations · 13 references
Life SciencesGeneticsMolecular GeneticsGenomicsPhylogeneticsVirologyDna SequencingGenome SequencingPathogen GenomicsPhylogenetic Sequence AnalysisViral GenomicsVirus TaxonomyLineage AssignmentPathogen Genome SequencingPhylogenetic Analysis Of PathogensPhylogenetic Character AnalysisPhylogenetic Diversity AnalysisPhylogenomics Of VirusesViral Genome SequencingVirus Evolutionary Relationships
Here, we present the complete genome sequences of two Zika virus (ZIKV) strains, Zika virus/Homo sapiens-tc/THA/2014/SV0127-14 and Zika virus/H. sapiens-tc/PHL/2012/CPC-0740, isolated from the blood of patients collected in Thailand, 2014, and the Philippines, 2012, respectively. Sequencing and phylogenetic analysis showed that both strains belong to the Asian lineage.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Quality control and preprocessing of metagenomic datasets
Robert Schmieder, Robert A. Edwards · Bioinformatics · 2011 · 5.4K citations · Full text