Genome Announcements · 2015 · 85 citations · 13 references
Life SciencesInfectious DiseasesVeterinary MicrobiologyGenomicsMolecular VirologyVirologyAnimal Infectious DiseasesInfectious DiarrheaLivestock Infectious DiseasesViral EpidemiologyViral GenomicsViral InfectionsCoronavirus DiarrheaMolecular Epidemiology Of VirusesMolecular Outbreak InvestigationPorcine Infectious DiseasesSwine Viral GastroenteritisWhole-genome Sequence Analysis
Porcine epidemic diarrhea virus (PEDV) is a member of the family Coronaviridae and can cause severe outbreaks of diarrhea in piglets from different age groups. Here, we report the complete genome sequence (28,028 nt) of a PEDV strain isolated during a novel outbreak in Belgium.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Gregory W. Stevenson, Hai Hoang, Kent Schwartz et al. · Journal of Veterinary Diagnostic Investigation · 2013 · 711 citations · Full text
Veterinary Medicine, Infectious Diseases, Veterinary Microbiology +17
Qi Chen, Ganwu Li, Judith Stasko et al. · Journal of Clinical Microbiology · 2013 · 433 citations · Full text
Veterinary Medicine, Infectious Diseases, Veterinary Microbiology +17