Nucleic Acids Research · 2016 · 5.7K citations · 24 references
Life SciencesBioinformaticsEvolutionary BiologyMolecular EvolutionPhylogeneticsSequence AnalysisMaximum Likelihood PhylogeneticsModel Selection In PhylogeneticsMolecular PhylogenyPhylogenetic AnalysisPhylogenetic Sequence AnalysisPhylogenetic Tree ReconstructionMaximum Likelihood Tree SearchModel-based Phylogenetic InferenceMolecular Evolutionary ModelsPhylogenetic LikelihoodTree Searching AlgorithmsTree Topology AnalysisTree Topology SearchTree Topology Testing
This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide range of evolutionary models including mixture and partition models. W-IQ-TREE performs fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests. All computations are conducted on a dedicated computer cluster and the users receive the results via URL or email. W-IQ-TREE is available at http://iqtree.cibiv.univie.ac.at It is free and open to all users and there is no login requirement.
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41.5K citations · Full text
Confidence Limits on Phylogenies: An Approach Using the Bootstrap
Joseph Felsenstein · Evolution · 1985 · 19.3K citations