AdapterRemoval v2: rapid adapter trimming, identification, and read merging - Concepedia

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Publication | Open Access

AdapterRemoval v2: rapid adapter trimming, identification, and read merging

DOI Full Paper Access

2.1K

Citations

16

References

2016

Year

Mikkel Schubert, Stinus Lindgreen, Ludovic Orlando

BMC Research Notes

Abstract

We show that AdapterRemoval v2 compares favorably with existing tools, while offering superior throughput to most alternatives examined here, both for single and multi-threaded operations.

References

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Cutadapt removes adapter sequences from high-throughput sequencing reads Marcel Martin EMBnet journal GeneticsGenomicsHigh Throughput SequencingMolecular EcologyColor Space Data	2011	34K
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR Jiajie Zhang, Kassian Kobert, Tomáš Flouri, Bioinformatics	2013	4.7K
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads Hongshan Jiang, Rong Lei, Shou‐Wei Ding, BMC Bioinformatics	2014	1.6K
Comparison of Sequencing Utility Programs Erik Aronesty The Open Bioinformatics Journal EngineeringGeneticsHigh ThroughputSoftware EngineeringGenomics	2013	1.2K
FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms Matthias Dodt, Johannes T. Roehr, Rina Ahmed-Begrich, Biology BiologyLong-read SequencingSequencingSplice Leader SequencesEngineering	2012	747
AdapterRemoval: easy cleaning of next-generation sequencing reads Stinus Lindgreen BMC Research Notes	2012	625
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX Mikkel Schubert, Luca Ermini, Clio Der Sarkissian, Nature Protocols PhylogeneticsMolecular EcologyNatural SciencesGeneticsEvolutionary Biology	2014	548
Kraken: A set of tools for quality control and analysis of high-throughput sequence data Matthew P. Davis, Stijn van Dongen, Cei Abreu‐Goodger, Methods EngineeringGeneticsData PreparationGenomicsSoftware Analysis	2013	447

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