arXiv (Cornell University) · 2015 · 32 citations · 21 references
ComputingBiostatisticsBayesian Data AnalysisStochastic ProcessesTransport PhenomenaApproximate Bayesian ComputationBayesian ComputationBayesian StatisticsMarkov Chain Monte CarloMonte Carlo MethodsMonte Carlo SimulationBayesian Computation For Stochastic Simulation ModelsConditional DistributionsGibbs SamplingMarginal DistributionsMarkov Chain Monte Carlo Approximate Bayesian ComputationMeasurable SpacesOrdinary Differential Equation SystemsVelocity
Let $π_{0}$ and $π_{1}$ be two distributions on the Borel space $(\mathbb{R}^{d},\mathcal{B}(\mathbb{R}^{d}))$. Any measurable function $T:\mathbb{R}^{d}\rightarrow\mathbb{R}^{d}$ such that $Y=T(X)\simπ_{1}$ if $X\simπ_{0}$ is called a transport map from $π_{0}$ to $π_{1}$. For any $π_{0}$ and $π_{1}$, if one could obtain an analytical expression for a transport map from $π_{0}$ to $π_{1}$, then this could be straightforwardly applied to sample from any distribution. One would map draws from an easy-to-sample distribution $π_{0}$ to the target distribution $π_{1}$ using this transport map. Although it is usually impossible to obtain an explicit transport map for complex target distributions, we show here how to build a tractable approximation of a novel transport map. This is achieved by moving samples from $π_{0}$ using an ordinary differential equation with a velocity field that depends on the full conditional distributions of the target. Even when this ordinary differential equation is time-discretized and the full conditional distributions are numerically approximated, the resulting distribution of mapped samples can be efficiently evaluated and used as a proposal within sequential Monte Carlo samplers. We demonstrate significant gains over state-of-the-art sequential Monte Carlo samplers at a fixed computational complexity on a variety of applications.
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Nonequilibrium Equality for Free Energy Differences
Christopher Jarzynski · Physical Review Letters · 1997 · 5.4K citations · Full text
Radford M. Neal · Statistics and Computing · 2001 · 1.2K citations