2009 · 26 citations · 50 references
Life SciencesBiologyZoologyPhylogeneticsPhylogeographySpeciationComparative PhylogeographyEvolutionary RelationshipsMaximum Likelihood PhylogeneticsPhylogenetic Comparative MethodsPhylogenetic InferenceVertebrate EvolutionGeological VicarianceMaximum Parsimony InferenceMitochondrial Dna PhylogeneticsNeighbor-joiningNeighbor-joining AnalysisPhylogenetic Hypothesis TestingVicariance EventsVicariance Theory
of three Trichiurus species based on mitochondrial DNA. Zoological Studies 48(6): 835-849. This study integrated most available genetic data of the “Trichiurus lepturus complex ” and examined its species status and population structure using mitochondrial (mt) DNA sequences. Both the maximum-parsimony and Neighbor-joining distance trees supported 3 clear branches at 100 % bootstrap value support. Due to a decisive genetic difference based on mtDNA cytochrome b, cytochrome oxidase subunit I, and 16S ribosomal RNA with the Kimura 2 parameter or maximum composite likelihood models, all historically confusing “T. lepturus complex” morphs were suggested to be 3 separate species: T. japonicus, T. lepturus, and T. sp. 2. This study suggested that T. lepturus from the Indo-Pacific in previous studies and T. sp. 2 are the same species. During the Miocene, these 3 Trichiurus species diverged from each other. According to the mtDNA phylogeographical patterns presented here, the vicariance events important to the speciation or structure of the “T. lepturus complex ” were: (1) a warming event occurring around Japan during the middle Miocene, (2) cold water upwelling close to the
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text
MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations