International Journal of Molecular Sciences · 2009 · 27 citations · 38 references
Life SciencesBiologyEvolutionary BiologyPhylogeneticsPhylogeographySpeciationComparative PhylogeographyDivergence Time EstimationEvolutionary RelationshipsLineage DivergencePhylogenetic Comparative MethodsPhylogenetic GeneticsGenealogical ConcordanceIncomplete Lineage SortingIncomplete Lineage Sorting AnalysisLineage SortingNuclear Dna MarkersNuclear Dna PhylogeographyPhylogeographic BreaksPhylogeographic Inference
Genealogical concordance is a critical overlay of all phylogenetic analyses, irrespective of taxonomic level. To assess such patterns of congruence we have compiled and derived sequence data for two mitochondrial (16S rRNA, COI) and two nuclear (ITS1, p26) markers in 14 American populations of the hypersaline branchiopod Artemia franciscana. Cladistic analysis revealed three reciprocally monophyletic mitochondrial clades. For nuclear DNA, incomplete lineage sorting was evident presumably as a result of slower coalescence or male-mediated dispersal. Our findings capture the genealogical interval between gene splitting and population divergence. In this sense, strong indications are provided in favour of a superspecies status and ongoing speciation in A. franciscana.
38
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text
MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
Pablo Librado, Julio Rozas · Bioinformatics · 2009 · 16.4K citations · Full text