Molecular Phylogenetics and Evolution · 2012 · 108 citations · 52 references
Life SciencesEvolutionary BiologyMolecular BiologyPhylogeneticsPlant TaxonomySystematicsMolecular PhylogenyPhylogenomic AnalysisProtozoan EvolutionProtozoan MorphologyProtozoan SystematicsProtozoan TaxonomyProtozoan ClassificationProtozoan Evolutionary RelationshipsProtozoan Genera ClassificationProtozoan PhylogenyProtozoan Taxonomic Cataloguing
52
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text
MODELTEST: testing the model of DNA substitution.
David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations